Detailed information of SNP:
|
SNP ID:
sf0909036703(Gbrowse)
Chromosome: chr09 Position: 9036703 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 77.31% | 22.69% |
| All Indica | 731 | 65.94% | 34.06% |
| All Japonica | 490 | 95.51% | 4.49% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 340 | 69.41% | 30.59% |
| Indica II | 203 | 65.52% | 34.48% |
| Indica Intermediate | 188 | 60.11% | 39.89% |
| Temperate Japonica | 331 | 95.77% | 4.23% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909036703 | G->A | LOC_Os09g15010(LOC_Os09g15010.1) | Synonymous |