Detailed information of SNP:



SNP ID: sf0909041993(Gbrowse)

Chromosome: chr09

Position: 9041993
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1392 63.86% 36.14%
All Indica786 93.26% 6.74%
All Japonica494 16.19% 83.81%
Aus67 85.07% 14.93%
Indica I375 91.47% 8.53%
Indica II200 93.50% 6.50%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica333 17.72% 82.28%
Tropical Japonica94 4.26% 95.74%
Japonica Intermediate67 25.37% 74.63%
Group VI/Aromatic8 37.50% 62.50%
Intermediate37 43.24% 56.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0909041993 G->A INTERGENIC None