Detailed information of SNP:
|
SNP ID:
sf0909041993(Gbrowse)
Chromosome: chr09 Position: 9041993 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 63.86% | 36.14% |
| All Indica | 786 | 93.26% | 6.74% |
| All Japonica | 494 | 16.19% | 83.81% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 200 | 93.50% | 6.50% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 17.72% | 82.28% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 8 | 37.50% | 62.50% |
| Intermediate | 37 | 43.24% | 56.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909041993 | G->A | INTERGENIC | None |