Detailed information of SNP:
|
SNP ID:
sf0909045503(Gbrowse)
Chromosome: chr09 Position: 9045503 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 95.13% | 4.87% |
| All Indica | 718 | 90.95% | 9.05% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 326 | 85.28% | 14.72% |
| Indica II | 193 | 96.37% | 3.63% |
| Indica Intermediate | 199 | 94.97% | 5.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909045503 | G->A | INTERGENIC | None |