Detailed information of SNP:
|
SNP ID:
sf0909055771(Gbrowse)
Chromosome: chr09 Position: 9055771 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 88.08% | 11.92% |
| All Indica | 795 | 96.86% | 3.14% |
| All Japonica | 483 | 72.26% | 27.74% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 322 | 62.42% | 37.58% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909055771 | C->T | LOC_Os09g15020(LOC_Os09g15020.1) | INTRON |