Detailed information of SNP:
|
SNP ID:
sf0909064654(Gbrowse)
Chromosome: chr09 Position: 9064654 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.66% | 34.34% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 19.10% | 80.90% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909064654 | T->C | INTERGENIC | None |