Detailed information of SNP:
|
SNP ID:
sf0909064985(Gbrowse)
Chromosome: chr09 Position: 9064985 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 62.99% | 37.01% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 496 | 17.14% | 82.86% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909064985 | A->G | LOC_Os09g15030(LOC_Os09g15030.1) | Non-Synonymous SNP |