Detailed information of SNP:
|
SNP ID:
sf0909066655(Gbrowse)
Chromosome: chr09 Position: 9066655 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 96.30% | 3.70% |
| All Indica | 795 | 97.11% | 2.89% |
| All Japonica | 489 | 94.27% | 5.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 331 | 94.86% | 5.14% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909066655 | A->G | LOC_Os09g15030(LOC_Os09g15030.1) | Non-Synonymous SNP |