Detailed information of SNP:
|
SNP ID:
sf0909073794(Gbrowse)
Chromosome: chr09 Position: 9073794 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 94.83% | 5.17% |
| All Indica | 791 | 96.84% | 3.16% |
| All Japonica | 481 | 90.64% | 9.36% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 369 | 93.77% | 6.23% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 322 | 86.65% | 13.35% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909073794 | T->A | LOC_Os09g15040(LOC_Os09g15040.1) | INTRON |