Detailed information of SNP:
|
SNP ID:
sf0909127169(Gbrowse)
Chromosome: chr09 Position: 9127169 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.82% | 47.18% |
| All Indica | 799 | 89.36% | 10.64% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 30.77% | 69.23% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909127169 | G->A | LOC_Os09g15080(LOC_Os09g15080.1) | INTRON |