Detailed information of SNP:
|
SNP ID:
sf0909161328(Gbrowse)
Chromosome: chr09 Position: 9161328 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.62% | 40.38% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909161328 | C->G | INTERGENIC | None |