Detailed information of SNP:
|
SNP ID:
sf0909169083(Gbrowse)
Chromosome: chr09 Position: 9169083 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 52.34% | 47.66% |
| All Indica | 797 | 78.17% | 21.83% |
| All Japonica | 492 | 17.68% | 82.32% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 72.99% | 27.01% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 332 | 19.88% | 80.12% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909169083 | C->A | INTERGENIC | None |