Detailed information of SNP:
|
SNP ID:
sf0909176525(Gbrowse)
Chromosome: chr09 Position: 9176525 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1280 | 71.33% | 28.67% |
| All Indica | 669 | 49.18% | 50.82% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 63 | 69.84% | 30.16% |
| Indica I | 312 | 50.64% | 49.36% |
| Indica II | 178 | 44.38% | 55.62% |
| Indica Intermediate | 179 | 51.40% | 48.60% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909176525 | G->A | LOC_Os09g15120(LOC_Os09g15120.1) | Synonymous |