Detailed information of SNP:
|
SNP ID:
sf0909178225(Gbrowse)
Chromosome: chr09 Position: 9178225 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1286 | 77.06% | 22.94% |
| All Indica | 677 | 61.45% | 38.55% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 310 | 66.45% | 33.55% |
| Indica II | 189 | 53.97% | 46.03% |
| Indica Intermediate | 178 | 60.67% | 39.33% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909178225 | A->G | LOC_Os09g15120(LOC_Os09g15120.1) | Non-Synonymous SNP |