Detailed information of SNP:
|
SNP ID:
sf0909180182(Gbrowse)
Chromosome: chr09 Position: 9180182 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1327 | 63.23% | 36.77% |
| All Indica | 740 | 41.49% | 58.51% |
| All Japonica | 483 | 96.48% | 3.52% |
| Aus | 57 | 56.14% | 43.86% |
| Indica I | 339 | 47.49% | 52.51% |
| Indica II | 202 | 35.15% | 64.85% |
| Indica Intermediate | 199 | 37.69% | 62.31% |
| Temperate Japonica | 326 | 95.40% | 4.60% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 37 | 70.27% | 29.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909180182 | T->C | LOC_Os09g15130(LOC_Os09g15130.1) | Synonymous |