Detailed information of SNP:
|
SNP ID:
sf0909183911(Gbrowse)
Chromosome: chr09 Position: 9183911 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 75.00% | 25.00% |
| All Indica | 769 | 65.15% | 34.85% |
| All Japonica | 494 | 90.89% | 9.11% |
| Aus | 63 | 74.60% | 25.40% |
| Indica I | 360 | 61.11% | 38.89% |
| Indica II | 206 | 69.42% | 30.58% |
| Indica Intermediate | 203 | 67.98% | 32.02% |
| Temperate Japonica | 332 | 87.35% | 12.65% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909183911 | T->C | LOC_Os09g15140(LOC_Os09g15140.1) | Non-Synonymous SNP |