Detailed information of SNP:
|
SNP ID:
sf0909223828(Gbrowse)
Chromosome: chr09 Position: 9223828 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.78% | 36.22% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909223828 | T->C | INTERGENIC | None |