Detailed information of SNP:
|
SNP ID:
sf0909237380(Gbrowse)
Chromosome: chr09 Position: 9237380 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 95.19% | 4.81% |
| All Indica | 797 | 96.99% | 3.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 41.54% | 58.46% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909237380 | G->T | LOC_Os09g15220(LOC_Os09g15220.1) | Non-Synonymous SNP |