Detailed information of SNP:
|
SNP ID:
sf0909259802(Gbrowse)
Chromosome: chr09 Position: 9259802 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 70.80% | 29.20% |
| All Indica | 799 | 95.87% | 4.13% |
| All Japonica | 496 | 26.41% | 73.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 26.87% | 73.13% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909259802 | C->T | INTERGENIC | None |