Detailed information of SNP:
|
SNP ID:
sf0909267785(Gbrowse)
Chromosome: chr09 Position: 9267785 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 69.29% | 30.71% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 25.55% | 74.45% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 26.27% | 73.73% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 9 | 44.44% | 55.56% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909267785 | A->G | LOC_Os09g15250(LOC_Os09g15250.1) | Synonymous |