Detailed information of SNP:
SNP ID:
sf0909282735(Gbrowse)
Chromosome: chr09 Position: 9282735 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1415 | 94.91% | 5.09% |
All Indica | 799 | 95.99% | 4.01% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 63 | 47.62% | 52.38% |
Indica I | 375 | 94.40% | 5.60% |
Indica II | 213 | 99.53% | 0.47% |
Indica Intermediate | 211 | 95.26% | 4.74% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0909282735 | G->A | LOC_Os09g15260(LOC_Os09g15260.1) | INTRON |