Detailed information of SNP:
|
SNP ID:
sf0909287153(Gbrowse)
Chromosome: chr09 Position: 9287153 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 89.00% | 11.00% |
| All Indica | 789 | 97.08% | 2.92% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 99.01% | 0.99% |
| Temperate Japonica | 335 | 85.37% | 14.63% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909287153 | G->A | INTERGENIC | None |