Detailed information of SNP:
|
SNP ID:
sf0909296790(Gbrowse)
Chromosome: chr09 Position: 9296790 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 67.49% | 32.51% |
| All Indica | 796 | 94.10% | 5.90% |
| All Japonica | 494 | 19.84% | 80.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 210 | 97.62% | 2.38% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 16.47% | 83.53% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909296790 | C->A | INTERGENIC | None |