Detailed information of SNP:
|
SNP ID:
sf0909299847(Gbrowse)
Chromosome: chr09 Position: 9299847 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 87.02% | 12.98% |
| All Indica | 782 | 87.72% | 12.28% |
| All Japonica | 491 | 85.95% | 14.05% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 366 | 89.07% | 10.93% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 206 | 82.04% | 17.96% |
| Temperate Japonica | 332 | 87.35% | 12.65% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 66 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909299847 | T->A | INTERGENIC | None |