Detailed information of SNP:
|
SNP ID:
sf0909300675(Gbrowse)
Chromosome: chr09 Position: 9300675 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 66.45% | 33.55% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 495 | 21.21% | 78.79% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 15.62% | 84.38% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909300675 | A->G | INTERGENIC | None |