Detailed information of SNP:
|
SNP ID:
sf0909318738(Gbrowse)
Chromosome: chr09 Position: 9318738 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1288 | 88.90% | 11.10% |
| All Indica | 690 | 93.04% | 6.96% |
| All Japonica | 494 | 83.81% | 16.19% |
| Aus | 50 | 98.00% | 2.00% |
| Indica I | 329 | 93.62% | 6.38% |
| Indica II | 192 | 91.15% | 8.85% |
| Indica Intermediate | 169 | 94.08% | 5.92% |
| Temperate Japonica | 334 | 85.63% | 14.37% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909318738 | G->T | INTERGENIC | None |