Detailed information of SNP:
|
SNP ID:
sf0909321985(Gbrowse)
Chromosome: chr09 Position: 9321985 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.53% | 49.47% |
| All Indica | 797 | 75.03% | 24.97% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 15.82% | 84.18% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909321985 | G->A | INTERGENIC | None |