Detailed information of SNP:
|
SNP ID:
sf0909340431(Gbrowse)
Chromosome: chr09 Position: 9340431 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 91.92% | 8.08% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 490 | 86.94% | 13.06% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 329 | 89.97% | 10.03% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909340431 | C->T | LOC_Os09g15310(LOC_Os09g15310.1) | Synonymous |