Detailed information of SNP:
|
SNP ID:
sf0909361852(Gbrowse)
Chromosome: chr09 Position: 9361852 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 73.62% | 26.38% |
| All Indica | 796 | 79.15% | 20.85% |
| All Japonica | 496 | 75.00% | 25.00% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 373 | 78.82% | 21.18% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 334 | 74.55% | 25.45% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909361852 | T->C | INTERGENIC | None |