Detailed information of SNP:
|
SNP ID:
sf0909365653(Gbrowse)
Chromosome: chr09 Position: 9365653 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 91.52% | 8.48% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 494 | 84.82% | 15.18% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 87.65% | 12.35% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909365653 | T->C | LOC_Os09g15330(LOC_Os09g15330.1) | Non-Synonymous SNP |
| sf0909365653 | T->C | LOC_Os09g15330(LOC_Os09g15330.2) | Non-Synonymous SNP |