Detailed information of SNP:
|
SNP ID:
sf0909368882(Gbrowse)
Chromosome: chr09 Position: 9368882 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 64.04% | 35.96% |
| All Indica | 716 | 35.06% | 64.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 328 | 37.80% | 62.20% |
| Indica II | 201 | 26.87% | 73.13% |
| Indica Intermediate | 187 | 39.04% | 60.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909368882 | C->T | LOC_Os09g15330(LOC_Os09g15330.1) | UTR_5_PRIME |
| sf0909368882 | C->T | LOC_Os09g15330(LOC_Os09g15330.2) | UTR_5_PRIME |