Detailed information of SNP:
|
SNP ID:
sf0909372541(Gbrowse)
Chromosome: chr09 Position: 9372541 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 50.07% | 49.93% |
| All Indica | 795 | 20.75% | 79.25% |
| All Japonica | 492 | 90.85% | 9.15% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 373 | 25.47% | 74.53% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 209 | 15.79% | 84.21% |
| Temperate Japonica | 330 | 88.48% | 11.52% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909372541 | C->T | INTERGENIC | None |