Detailed information of SNP:
|
SNP ID:
sf0909377208(Gbrowse)
Chromosome: chr09 Position: 9377208 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 90.24% | 9.76% |
| All Indica | 791 | 97.35% | 2.65% |
| All Japonica | 423 | 74.94% | 25.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 94.55% | 5.45% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 66.78% | 33.22% |
| Tropical Japonica | 76 | 97.37% | 2.63% |
| Japonica Intermediate | 58 | 86.21% | 13.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909377208 | A->G | INTERGENIC | None |