Detailed information of SNP:
|
SNP ID:
sf0909392049(Gbrowse)
Chromosome: chr09 Position: 9392049 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 85.58% | 14.42% |
| All Indica | 743 | 75.50% | 24.50% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 343 | 73.18% | 26.82% |
| Indica II | 205 | 80.49% | 19.51% |
| Indica Intermediate | 195 | 74.36% | 25.64% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909392049 | G->A | INTERGENIC | None |