Detailed information of SNP:
|
SNP ID:
sf0909393178(Gbrowse)
Chromosome: chr09 Position: 9393178 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 61.62% | 38.38% |
| All Indica | 783 | 35.12% | 64.88% |
| All Japonica | 483 | 97.10% | 2.90% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 369 | 36.59% | 63.41% |
| Indica II | 211 | 33.18% | 66.82% |
| Indica Intermediate | 203 | 34.48% | 65.52% |
| Temperate Japonica | 324 | 97.53% | 2.47% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909393178 | T->A | INTERGENIC | None |