Detailed information of SNP:
|
SNP ID:
sf0909393180(Gbrowse)
Chromosome: chr09 Position: 9393180 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 61.06% | 38.94% |
| All Indica | 792 | 83.84% | 16.16% |
| All Japonica | 481 | 19.33% | 80.67% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 372 | 78.23% | 21.77% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 320 | 14.06% | 85.94% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909393180 | C->T | INTERGENIC | None |