Detailed information of SNP:
|
SNP ID:
sf0909394153(Gbrowse)
Chromosome: chr09 Position: 9394153 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1272 | 71.54% | 28.46% |
| All Indica | 687 | 54.00% | 46.00% |
| All Japonica | 465 | 91.40% | 8.60% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 330 | 49.09% | 50.91% |
| Indica II | 181 | 64.09% | 35.91% |
| Indica Intermediate | 176 | 52.84% | 47.16% |
| Temperate Japonica | 314 | 89.81% | 10.19% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 62 | 90.32% | 9.68% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909394153 | T->C | INTERGENIC | None |