Detailed information of SNP:
|
SNP ID:
sf0909395913(Gbrowse)
Chromosome: chr09 Position: 9395913 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 94.66% | 5.34% |
| All Indica | 791 | 97.35% | 2.65% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 65 | 30.77% | 69.23% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 205 | 98.54% | 1.46% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909395913 | A->G | INTERGENIC | None |