Detailed information of SNP:
|
SNP ID:
sf0909401514(Gbrowse)
Chromosome: chr09 Position: 9401514 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 95.20% | 4.80% |
| All Indica | 797 | 97.37% | 2.63% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909401514 | C->T | INTERGENIC | None |