Detailed information of SNP:
|
SNP ID:
sf0909447930(Gbrowse)
Chromosome: chr09 Position: 9447930 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 96.26% | 3.74% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909447930 | T->A | LOC_Os09g15430(LOC_Os09g15430.3) | INTRON |
| sf0909447930 | T->A | LOC_Os09g15430(LOC_Os09g15430.1) | INTRON |
| sf0909447930 | T->A | LOC_Os09g15430(LOC_Os09g15430.4) | INTRON |
| sf0909447930 | T->A | LOC_Os09g15430(LOC_Os09g15430.2) | INTRON |