Detailed information of SNP:
|
SNP ID:
sf0909459278(Gbrowse)
Chromosome: chr09 Position: 9459278 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 96.54% | 3.46% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909459278 | A->T | LOC_Os09g15460(LOC_Os09g15460.1) | Non-Synonymous SNP |