Detailed information of SNP:
|
SNP ID:
sf0909467500(Gbrowse)
Chromosome: chr09 Position: 9467500 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 96.93% | 3.07% |
| All Indica | 794 | 97.98% | 2.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 64.41% | 35.59% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909467500 | T->C | LOC_Os09g15470(LOC_Os09g15470.1) | Synonymous |