Detailed information of SNP:
|
SNP ID:
sf0909485563(Gbrowse)
Chromosome: chr09 Position: 9485563 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 97.08% | 2.92% |
| All Indica | 791 | 99.75% | 0.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 46.67% | 53.33% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 205 | 99.02% | 0.98% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909485563 | G->C | LOC_Os09g15500(LOC_Os09g15500.1) | Non-Synonymous SNP |