Detailed information of SNP:
|
SNP ID:
sf0909533949(Gbrowse)
Chromosome: chr09 Position: 9533949 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 95.92% | 4.08% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 488 | 89.96% | 10.04% |
| Aus | 57 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 92.99% | 7.01% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909533949 | C->T | LOC_Os09g15620(LOC_Os09g15620.1) | INTRON |