Detailed information of SNP:
SNP ID:
sf0909577118(Gbrowse)
Chromosome: chr09 Position: 9577118 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1314 | 98.78% | 1.22% |
All Indica | 729 | 99.86% | 0.14% |
All Japonica | 464 | 96.77% | 3.23% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 337 | 100.00% | 0.00% |
Indica II | 194 | 99.48% | 0.52% |
Indica Intermediate | 198 | 100.00% | 0.00% |
Temperate Japonica | 308 | 98.70% | 1.30% |
Tropical Japonica | 92 | 97.83% | 2.17% |
Japonica Intermediate | 64 | 85.94% | 14.06% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0909577118 | C->T | LOC_Os09g15700(LOC_Os09g15700.1) | Synonymous |