Detailed information of SNP:



SNP ID: sf0909577118(Gbrowse)

Chromosome: chr09

Position: 9577118
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1314 98.78% 1.22%
All Indica729 99.86% 0.14%
All Japonica464 96.77% 3.23%
Aus67 100.00% 0.00%
Indica I337 100.00% 0.00%
Indica II194 99.48% 0.52%
Indica Intermediate198 100.00% 0.00%
Temperate Japonica308 98.70% 1.30%
Tropical Japonica92 97.83% 2.17%
Japonica Intermediate64 85.94% 14.06%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0909577118 C->T LOC_Os09g15700(LOC_Os09g15700.1) Synonymous