Detailed information of SNP:
|
SNP ID:
sf0909704728(Gbrowse)
Chromosome: chr09 Position: 9704728 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 55.41% | 44.59% |
| All Indica | 790 | 84.05% | 15.95% |
| All Japonica | 492 | 7.11% | 92.89% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 371 | 88.14% | 11.86% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 209 | 73.68% | 26.32% |
| Temperate Japonica | 333 | 4.80% | 95.20% |
| Tropical Japonica | 91 | 18.68% | 81.32% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909704728 | T->C | LOC_Os09g15880(LOC_Os09g15880.1) | INTRON |