Detailed information of SNP:
|
SNP ID:
sf0909730505(Gbrowse)
Chromosome: chr09 Position: 9730505 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 68.82% | 31.18% |
| All Indica | 772 | 82.64% | 17.36% |
| All Japonica | 489 | 48.67% | 51.33% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 360 | 86.39% | 13.61% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 200 | 70.50% | 29.50% |
| Temperate Japonica | 330 | 58.79% | 41.21% |
| Tropical Japonica | 92 | 27.17% | 72.83% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909730505 | T->C | INTERGENIC | None |