Detailed information of SNP:
|
SNP ID:
sf0909748677(Gbrowse)
Chromosome: chr09 Position: 9748677 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 97.31% | 2.69% |
| All Indica | 795 | 99.75% | 0.25% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909748677 | A->G | LOC_Os09g15950(LOC_Os09g15950.1) | INTRON |