Detailed information of SNP:
|
SNP ID:
sf0909771072(Gbrowse)
Chromosome: chr09 Position: 9771072 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 96.00% | 4.00% |
| All Indica | 759 | 93.15% | 6.85% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 362 | 91.44% | 8.56% |
| Indica II | 209 | 97.13% | 2.87% |
| Indica Intermediate | 188 | 92.02% | 7.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909771072 | C->T | LOC_Os09g15980(LOC_Os09g15980.1) | INTRON |
| sf0909771072 | C->T | LOC_Os09g15980(LOC_Os09g15980.2) | INTRON |