Detailed information of SNP:
|
SNP ID:
sf0909781888(Gbrowse)
Chromosome: chr09 Position: 9781888 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.56% | 9.44% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909781888 | C->T | LOC_Os09g16010(LOC_Os09g16010.1) | Non-Synonymous SNP |