Detailed information of SNP:
|
SNP ID:
sf0909782540(Gbrowse)
Chromosome: chr09 Position: 9782540 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 66.67% | 33.33% |
| All Indica | 797 | 91.59% | 8.41% |
| All Japonica | 497 | 27.97% | 72.03% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 211 | 87.68% | 12.32% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0909782540 | C->G | LOC_Os09g16010(LOC_Os09g16010.1) | Synonymous |